Which statistical test do you use for the differential abundance analysis? Heather Dwyer January 04, 2020 01:23 Updated The differential abundance analysis relies on the edgeR package (Robinson et al., Bioinformatics, 2010; McCarthy et al., Nucleic Acids Res, 2012). Related articles Which distance metric do you use for the hierarchical clustering? How do you handle batch effects? Comments 0 comments Please sign in to leave a comment.